YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221324728
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPQKKTDSF RLEPVPDQHI EVKDKPRRKW YIGETSVWVF LFLYLIAIAY PLLWMVMSAF  60
   61 KNSDDIFEHS WSLPSSWHPE NFVSAWNQGI SSYFMNSVIV TALTCVITVF ISAWAAYGLS 120
  121 RFEFKGKGFF LVLCLGGLML TPQVSLVPLY SIIQSLGLYN TYWALILPYA AYRIPFTIIL 180
  181 IRSYFLSISK ELEEAAYLDG CTSFGVFFRI FLPMSVPILV TSGILTAYHT WNEFMFAIIF 240
  241 IDDENLRTIP AGLMQFRDAL QTDWGVLLAG LTISAAPIII LFLLMQKYFV RGIASGSVKG 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	34	0.96
Transmembrane Helix	35	54	0.92
Non-Cytoplasmic	55	93	0.93
Transmembrane Helix	94	117	0.89
Cytoplasmic	118	127	0.86
Transmembrane Helix	128	150	0.90
Non-Cytoplasmic	151	164	0.80
Transmembrane Helix	165	186	0.89
Cytoplasmic	187	205	0.93
Transmembrane Helix	206	228	0.92
Non-Cytoplasmic	229	263	0.94
Transmembrane Helix	264	285	0.93
Cytoplasmic	286	300	0.92