YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221320314
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRAFLLILQ LIAIFVLIGI TAVFVAAEFA IVKIRGSKIN QLIESGDSRA LAAHKIISNL  60
   61 DEYLSACQLG ITITALGLGW LGEPTFERFL HPLFTMTGIP EPFNHIVTFV VAFIIVTFLH 120
  121 VVMGELAPKT VSIQKAEAVS LWIAKPLIWF YKITYPFIKA LNGSASFLVK LFGFHSVKEH 180
  181 QVVISEEELR LILSESYEKG EINQSEFRYV NKIFEFDNRV AREIMIPRTE IAVISLEQSL 240
  241 EEAIHHIINE RYTRYPVIKD DKDHILGIIN SKDMFKAYFL GQPIKLNQIM RPVIRVIESI 300
  301 PVQQLLIRMQ KERIHMAILV DEYGGTAGLV TVEDIIEEIV GEIRDEYDQD ETPHILKKGE 360
  361 HHYVMDGKAL IDEVNDLLDI AIENEEIDTI AGWLLTQKME LKAGDVIHAE GCEFKILDAE 420
  421 DHHIRFVEIK KTDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.64
Transmembrane Helix	7	32	0.83
Cytoplasmic	33	62	0.66
Transmembrane Helix	63	82	0.81
Non-Cytoplasmic	83	102	0.66
Transmembrane Helix	103	124	0.90
Cytoplasmic	125	154	0.57
Transmembrane Helix	155	169	0.28
Non-Cytoplasmic	170	434	0.61