YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YRHG_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRKPDEIA EAAIEAGMKK IKLPLPSLLV LGFLGGAFIA LGYLLDIRVI GDLPKEWGSL  60
   61 SSLIGAAVFP VGLILVVLAG AELITGNMMS VAMALFSRKI SVKELAINWG IVTIMNLIGA 120
  121 LFVAYFFGHL VGLTETGPYL EKTIAVAQGK LDMSFGKVLI SAIGCNWLVC LAVWLSFGAQ 180
  181 DAAGKILGIW FPIMAFVAIG FQHVVANMFV IPAAIFAGSF TWGQFIGNII PAFIGNVIGG 240
  241 AVFVGLIYFI AYHKKDRSRK EMKQVS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	45	0.85
Non-Cytoplasmic	46	62	0.90
Transmembrane Helix	63	86	0.90
Cytoplasmic	87	104	0.90
Transmembrane Helix	105	128	0.92
Non-Cytoplasmic	129	157	0.92
Transmembrane Helix	158	178	0.94
Cytoplasmic	179	186	0.89
Transmembrane Helix	187	211	0.83
Non-Cytoplasmic	212	228	0.79
Transmembrane Helix	229	252	0.93
Cytoplasmic	253	266	0.99