YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16079543, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLEYTYWK IAAHLVNSGY GVIQAGESDE IWLEAPDKSS HDLVRLYKHD LDFRQEMVRD  60
   61 IEEQAERVER VRHQLGRRRM KLLNVFFSTE APVDDWEEIA KKTFEKGTVS VEPAIVRGTM 120
  121 LRDDLQAVFP SFRTEDCSEE HASFENAQMA RERFLSLVLK QEEQRKTEAA VFQNGKPTFT 180
  181 YLFIALQILM FSLLEINGGS TNTETLVAFG AKENSLIAQG EWWRLLTPIV LHIGIAHLAF 240
  241 NTLALWSVGT AVERMYGSGR FLLIYLAAGI TGSIASFVFS PYPSAGASGA IFGCLGALLY 300
  301 VALSNRKMFL RTIGTNIIVI IIINLGFGFA VSNIDNSGHI GGLIGGFFAA AALGLPKAGA 360
  361 FGKRLLSAVF LIALAVGFSY YGLHSPSHQE SALIQQASEL YQEGKYEEVT ELLNGEAAQK 420
  421 DASADLLKIL AVSDIQIGEY DQAVSLLERA VKKEPKDHAS YYNLALLYAE KNELAQAEKA 480
  481 IQTAVKLKPK EQRYKELQWQ IENNKES

Type	Start	End	Confidence
Cytoplasmic	1	177	0.93
Transmembrane Helix	178	199	0.81
Non-Cytoplasmic	200	228	0.92
Transmembrane Helix	229	249	0.92
Cytoplasmic	250	260	0.76
Transmembrane Helix	261	279	0.94
Non-Cytoplasmic	280	284	0.78
Transmembrane Helix	285	303	0.96
Cytoplasmic	304	311	0.81
Transmembrane Helix	312	331	0.95
Non-Cytoplasmic	332	337	0.83
Transmembrane Helix	338	356	0.94
Cytoplasmic	357	364	0.76
Transmembrane Helix	365	384	0.94
Non-Cytoplasmic	385	507	0.99