YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YOCS_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	29	0.92
Non-Cytoplasmic	30	34	0.70
Transmembrane Helix	35	57	0.87
Cytoplasmic	58	67	0.93
Transmembrane Helix	68	90	0.90
Non-Cytoplasmic	91	97	0.74
Transmembrane Helix	98	119	0.93
Cytoplasmic	120	128	0.76
Transmembrane Helix	129	151	0.91
Non-Cytoplasmic	152	161	0.81
Transmembrane Helix	162	184	0.89
Cytoplasmic	185	191	0.88
Transmembrane Helix	192	212	0.94
Non-Cytoplasmic	213	221	0.82
Transmembrane Helix	222	244	0.90
Cytoplasmic	245	255	0.88
Transmembrane Helix	256	277	0.77
Non-Cytoplasmic	278	281	0.57
Transmembrane Helix	282	304	0.69
Cytoplasmic	305	321	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIIRKISHF AGQTFGIWVI VFAVLGFSFP SLFTWISSYI TIFLGIIMFG MGLTLQADDF  60
   61 KELVRKPWQV IIGVIAQYTI MPLVAFGLAF GLHLPAEIAV GVILVGCCPG GTASNVMTFL 120
  121 AKGNTALSVA VTTISTLLAP VVTPLLIMLF AKEWLPVSPG SLFISILQAV LFPIIAGLIV 180
  181 KMFFRKQVAK AVHALPLVSV IGIVAIVSAV VSGNRENLLQ SGLLIFSVVI LHNGIGYLLG 240
  241 FLCAKLLKMD YPSQKAIAIE VGMQNSGLGA ALATAHFSPL SAVPSAIFSV WHNLSGSMLA 300
  301 TYWSKKVKKK QAGSKSSNLS L