YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40938
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRMLEIFR LTIKNENGLF FATYSKKAVK SPLFWMILVY SIFTVFLIRA MHEEDPMEVP  60
   61 YPPAQINFRT SRKYISSNYA SSSRLGNHLF ELASVLSISR ELQRVPTFFI ENCYHEKMWE 120
  121 DSNTLIPGLM NHFLIINGSV PSSVKRVKFH QKCCTFDDPS LLDNYEDEYL HLTGTHYQSW 180
  181 KYFSHMRNEL IGYLKTTENT YMDLPKSGEN TFITCVHVRR GDFLRVGFHV ADENFIRSSL 240
  241 NLISRQVAKR ANTATVFFGD DYEFMDSLRN RTSKINAFVS QNSPADDLLY AKSNCDVVLI 300
  301 TAAHSTFGWW MGYFSKGNRV YYTDIQFTKD WILETGEFIS EDYYLPHWTP LKYAGSDNFT 360
  361 VIQSFK

Type	Start	End	Confidence
Cytoplasmic	1	31	0.80
Transmembrane Helix	32	52	0.79
Non-Cytoplasmic	53	366	0.93