YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40971
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMMNMSMTT MSGPVAKRHR MWMWYHVDVE DTVLFKSWTV FDAGTMVWTC FVVAAAGILL  60
   61 EALKYARWAT EERMKIDQEN VDSKTNFWKR HIIDSLYHFW QLLLAYILMN VYMVFSVYIC 120
  121 LSLCFGLAIG HFVFASRTGS SL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.57
Transmembrane Helix	21	35	0.38
Non-Cytoplasmic	36	43	0.55
Transmembrane Helix	44	65	0.87
Cytoplasmic	66	101	0.69
Transmembrane Helix	102	135	0.76
Non-Cytoplasmic	136	142	0.52