YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221322263
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	33	0.92
Non-Cytoplasmic	34	50	0.86
Transmembrane Helix	51	73	0.89
Cytoplasmic	74	80	0.86
Transmembrane Helix	81	102	0.94
Non-Cytoplasmic	103	109	0.80
Transmembrane Helix	110	131	0.94
Cytoplasmic	132	139	0.89
Transmembrane Helix	140	162	0.92
Non-Cytoplasmic	163	168	0.89
Transmembrane Helix	169	189	0.96
Cytoplasmic	190	199	0.84
Transmembrane Helix	200	220	0.92
Non-Cytoplasmic	221	229	0.79
Transmembrane Helix	230	249	0.94
Cytoplasmic	250	266	0.87
Transmembrane Helix	267	289	0.88
Non-Cytoplasmic	290	300	0.73
Transmembrane Helix	301	324	0.83
Cytoplasmic	325	332	0.71
Transmembrane Helix	333	350	0.93
Non-Cytoplasmic	351	360	0.78
Transmembrane Helix	361	384	0.84
Cytoplasmic	385	399	0.88
Transmembrane Helix	400	419	0.88
Non-Cytoplasmic	420	485	0.96
Transmembrane Helix	486	507	0.91
Cytoplasmic	508	532	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGKEKNAK NPMSLLIVLM AGLFLAILNQ TLLNVAMPHL MTEFGVSATT IQWLTTGYML  60
   61 VNGVLIPLSA FLITRFGQRS LFLVAMFCFT LGTLVCGIAP NFSTMLIGRL IQAVGGGILQ 120
  121 PLVMTTILLI FPPESRGKGM GIFGLAMMFA PAVGPTLSGW IIEHYTWRIM FYGLVPIGAI 180
  181 VIIVAFFIFK NMVEPQKIKL DTLGAILSIV GFASLLYGVS EAGSDGWTDP IVLSTVIIGA 240
  241 IAIVAFVVQQ LRHDDPMLDF RVFKYDIFSL SSVINIIITV ALYTGMFLLP IYLQNLVGFT 300
  301 ALQSGLLLLP GAIVMLIMSP ISGILFDKFG PRPLAIIGLL VTVVTTYQYT QLTIDTPYTH 360
  361 IMLIYSIRAF GMSLLMMPVM TAGMNQLPAR LNSHGTAMSN TLRQISGSIG TSLITTIYTN 420
  421 RTTFHYSQIA DKTSTADPNF LHAFQNAVSN LMVNMNVSYD TAKTYVYSHI YKHASLDSNV 480
  481 MGINDAFMWA TLFCVAGLIL SIFLRDVRKD KLRKKKKEEL SLLPAPKEAK ES