YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LTAS1_BACSU
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLFSYKLS FFVLAVILFW AKTYLSYKTE FNLGVKGTTQ EILLIFNPFS SAVFFLGLAL  60
   61 LAKGRKSAII MLIIDFLMTF VLYANILFYR FFDDFLTFPN IKQSGNVGNM GDGIFSIMAG 120
  121 HDIFYFLDII ILIAVLIWRP ELKEYKMKKR FASLVILSGI ALFFINLHYA EKDRPQLLTR 180
  181 TFDRNYIVKY LGLYNYTIYD GVQTAQTETQ RAYASSDDLT SVENYTTSHY AKPNAEYFGS 240
  241 AKGKNIIKIH LESFQSFLID YKLNGEEVTP FLNKLAHGGE DVTYFDNFFH QTGQGKTSDA 300
  301 ELTMDNSIFG LPEGSAFVTK GENTYQSLPA ILDQKEGYTS AVLHGDYKSF WNRDQIYKHI 360
  361 GYDKFFDAST YDMSDENVIN MGLKDKPFFT ESIPKLESLK QPFYAHLITL TNHYPFNLDE 420
  421 KDASLKKATT GDNTVDSYFQ TARYLDEALE QFFKELKEAG LYDNSVIMIY GDHNGISENH 480
  481 NRAMKEILGK EITDYQNAQN QRVPLMIRVP GKKGGVNHTY GGEIDVMPTL LHLEGIDSQK 540
  541 YINFGTDLFS KDHDDTVAFR NGDFVTPKYT SVDNIIYDTK TGEKLKANEE TKNLKTRVNQ 600
  601 QLSLSDSVLY KDLLRFHKLN DFKAVDPSDY HYGKEKEIK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	25	0.89
Non-Cytoplasmic	26	41	0.89
Transmembrane Helix	42	62	0.93
Cytoplasmic	63	68	0.89
Transmembrane Helix	69	89	0.93
Non-Cytoplasmic	90	117	0.91
Transmembrane Helix	118	138	0.92
Cytoplasmic	139	150	0.87
Transmembrane Helix	151	170	0.97
Non-Cytoplasmic	171	639	0.99