YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7474798, gi\|1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.97
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	145	0.99
Transmembrane Helix	146	166	0.95
Cytoplasmic	167	179	0.90
Transmembrane Helix	180	199	0.95
Non-Cytoplasmic	200	225	0.92
Transmembrane Helix	226	248	0.86
Cytoplasmic	249	255	0.91
Transmembrane Helix	256	277	0.91
Non-Cytoplasmic	278	292	0.87
Transmembrane Helix	293	313	0.95
Cytoplasmic	314	333	0.92
Transmembrane Helix	334	355	0.94
Non-Cytoplasmic	356	368	0.89
Transmembrane Helix	369	391	0.91
Cytoplasmic	392	402	0.96
Transmembrane Helix	403	424	0.86
Non-Cytoplasmic	425	541	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRNRWWIIL LLFLVFLPKT SFAHAYIVKS SPGENSELKS APAQVEIEFN EPVEEGFHYI  60
   61 KVYNSNGDRL DTDKTEIKKD NHHIMTVKLK KNLPKDVYRA EWNAVSADGH PVSGVIPFSI 120
  121 GKADGGFSSQ KAADSALNPG TAADRAILYT ALSLFIGTVF FHLFWYKGKS EQLVKRTRRI 180
  181 LTGSIAALGL ALLLQLPIQT KANAGGGWGS AFQPGYIRET LFETAGGSIW IIQAALFVLL 240
  241 ALSVIPAIRK NRFSSFGYWT APLIFFFGLL LAKAFTGHAA VVEEKTVGIL MDFLHLTSAS 300
  301 IWVGGIAALV LLLSKEWRQP DKTLAWETVR RFSPWALTAV GVILFSGLLN GFFIIRSMDS 360
  361 LFHTAYGQAL LVKSGLFVFM LVLGAIHFLL TRKQRRTGIS RTLKAEWAIG IAVLITAAVF 420
  421 TSLPSPPEPA PEPFYQTKAI ENGQSVSLSI SPNQPGKNVF ELRVTDHNGD PVKNIQQITL 480
  481 TVYKTGLSGS ENKSTFTLKE KTKGVFQDQN LSINEKGNWK IKVHGLTGDF NEINIMFTKT 540
  541 N