YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BSDB_BACSU, PAAD...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAEFKRKGG GKVKLVVGMT GATGAIFGVR LLQWLKAAGV ETHLVVSPWA NVTIKHETGY  60
   61 TLQEVEQLAT YTYSHKDQAA AISSGSFDTD GMIVAPCSMK SLASIRTGMA DNLLTRAADV 120
  121 MLKERKKLVL LTRETPLNQI HLENMLALTK MGTIILPPMP AFYNRPRSLE EMVDHIVFRT 180
  181 LDQFGIRLPE AKRWNGIEKQ KGGA

Type	Start	End	Confidence
Cytoplasmic	1	12	0.64
Transmembrane Helix	13	32	0.65
Non-Cytoplasmic	33	204	0.92