YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16077317, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	34	0.93
Non-Cytoplasmic	35	54	0.80
Transmembrane Helix	55	76	0.84
Cytoplasmic	77	85	0.63
Transmembrane Helix	86	105	0.81
Non-Cytoplasmic	106	106	0.30
Transmembrane Helix	107	132	0.72
Cytoplasmic	133	150	0.71
Transmembrane Helix	151	170	0.77
Non-Cytoplasmic	171	176	0.75
Transmembrane Helix	177	198	0.91
Cytoplasmic	199	251	0.95
Transmembrane Helix	252	273	0.89
Non-Cytoplasmic	274	289	0.82
Transmembrane Helix	290	313	0.88
Cytoplasmic	314	321	0.89
Transmembrane Helix	322	341	0.93
Non-Cytoplasmic	342	348	0.70
Transmembrane Helix	349	371	0.92
Cytoplasmic	372	383	0.83
Transmembrane Helix	384	406	0.89
Non-Cytoplasmic	407	413	0.81
Transmembrane Helix	414	434	0.95
Cytoplasmic	435	455	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKDFASVTP AGKKTSVRWF IVFMLFLVTS INYADRATLS ITGDSVQHDL GLDSVAMGYV  60
   61 FSAFGWAYVI GQLPGGWLLD RFGSKTIIAL SIFFWSFFTL LQGAIGFFSA GTAIILLFAL 120
  121 RFLVGLSEAP SFPGNGRVVA SWFPSSERGT ASAFFNSAQY FAIVIFPPLM GWLTHSFGWH 180
  181 SVFVVMGIAG ILLAVIWLKT VYEPKKHPKV NEAELAYIEQ GGGLISMDDS KSKQETESKW 240
  241 PYIKQLLTNR MLIGVYIAQY CITTLTYFFL TWFPVYLVQA RGMSILEAGF VASLPALCGF 300
  301 AGGVLGGIVS DILLKKGRSL TFARKVPIIA GMLLSCSMIV CNYTDSAWLV VVIMSLAFFG 360
  361 KGFGALGWAV VSDTSPKECA GLSGGLFNTF GNIASITTPI IIGYIVNATG SFNGALVFVG 420
  421 ANAIAAILSY LLLVGPIKRV VLKKQEQDPD QSLPV