YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHSC_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNREFYFR RLHSLLGVIP VGIFLIQHLV VNQFAARGAE AFNSAAHFMD SLPFRYALEI  60
   61 FIIFLPLIYH AVYGVYIAFT AKNNAGQYSY MRNWLFVLQR VTGIITLIFV SWHVWETRIA 120
  121 AQMGAEVNFD MMANILSSPA MLGFYIVGVL STIFHFSNGL WSFAVTWGIT VTPRSQRIST 180
  181 YVTLIIFVAL SYVGLKAIFA FV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.86
Transmembrane Helix	12	31	0.92
Non-Cytoplasmic	32	56	0.87
Transmembrane Helix	57	79	0.89
Cytoplasmic	80	95	0.86
Transmembrane Helix	96	115	0.95
Non-Cytoplasmic	116	140	0.86
Transmembrane Helix	141	161	0.87
Cytoplasmic	162	177	0.77
Transmembrane Helix	178	200	0.91
Non-Cytoplasmic	201	202	0.89