YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SAPB_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSWYIDPD ILLKLGIATL IGMVIGLERE LKNKPLGLKT CIVIAVSSCM LTIVSINAAY  60
   61 HFPKYYRIMM DPLRLPAQII SGVGFIGAGV ILRKSNDVIS GLTTSAMIWG AAGLGLATGA 120
  121 GFYKEAFASL LFILISVEFL PWVVRKIGPD RLQEKDIRIR MSLSDKDKMT EILKEMKRRD 180
  181 IKAHSVRIDD LGEKDFPIME VKVRVHKNRY TTDVYYDIKA IEGVVGVKCD TL

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.71
Transmembrane Helix	11	27	0.85
Cytoplasmic	28	37	0.81
Transmembrane Helix	38	60	0.90
Non-Cytoplasmic	61	73	0.84
Transmembrane Helix	74	92	0.94
Cytoplasmic	93	98	0.85
Transmembrane Helix	99	120	0.90
Non-Cytoplasmic	121	125	0.77
Transmembrane Helix	126	145	0.88
Cytoplasmic	146	232	0.94