YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32468837, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	111	0.98
Transmembrane Helix	112	133	0.92
Non-Cytoplasmic	134	143	0.79
Transmembrane Helix	144	166	0.89
Cytoplasmic	167	173	0.81
Transmembrane Helix	174	192	0.90
Non-Cytoplasmic	193	211	0.76
Transmembrane Helix	212	231	0.93
Cytoplasmic	232	247	0.87
Transmembrane Helix	248	268	0.94
Non-Cytoplasmic	269	288	0.85
Transmembrane Helix	289	310	0.92
Cytoplasmic	311	328	0.88
Transmembrane Helix	329	351	0.91
Non-Cytoplasmic	352	358	0.91
Transmembrane Helix	359	379	0.94
Cytoplasmic	380	386	0.82
Transmembrane Helix	387	408	0.87
Non-Cytoplasmic	409	429	0.79
Transmembrane Helix	430	451	0.94
Cytoplasmic	452	461	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKETAKRL IELLGGKENI ISAAHCATRL RLVMKDESKI DQAQVEELDG VKGAFSSSGQ  60
   61 YQIIFGTGLV NKVFDAFSKE ADIEREEHVN HQDAAKEKLN PAARFAKTLS NIFVPIIPAI 120
  121 VASGLLMGLL GMINAFHWMS KDSALLQLLD MFSSAAFIFL PILIGVSASK EFGSNPYLGA 180
  181 VIGGIMIHPN LLNPWGLAEE TTDYMHLFGF DIALLGYQGT VIPVLLAVYV MSKVEKWTRK 240
  241 VVPHAVDLLV TPFVTVIVTG FVAFIAIGPL GRALGSGITV ALTYVYDHAG FVAGLIFGGT 300
  301 YSLIVLTGVH HSFHAIEAGL IADIGKNYLL PIWSMANVAQ GGAGLAVFFM AKKAKTKEIA 360
  361 LPAAFSAFLG ITEPVIFGVN LRYRKPFIAA MIGGALGGAY VVFTHVAANA YGLTGIPMIA 420
  421 IAAPFGFSNL IHYLIGMAIA AVSAFIAAFV MKINEDEERK K