YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148666321, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLKNVLYF QAGLGVLANM SLLCFYIFII VGHRPKPTDL ISCQLTFIHI MVCLTGGDLL  60
   61 LTDIFESLNI NNDFKCKATF YISRVMRCLS ICTTCLLSVF QAVTITPSTS CLAKFKQKLR 120
  121 KYMVYVFLCI WSFSFSYSSS RIFYVRGFTN VSETNQMQIT KSCLLFRMNS IIRVFIFTVT 180
  181 TSRDVFLVGM MLTTSTYMVI ILYRHQRQCK HLHSIKHLRA SPEKRATQTI LLLVIFFVVM 240
  241 YWVDFIISTT SVLLWIYDPV SLMVQKFLMY AYPTISPLVQ IGSDNRIIIM VKNMYSKHHQ 300
  301 RFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.71
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	39	0.65
Transmembrane Helix	40	62	0.78
Non-Cytoplasmic	63	84	0.65
Transmembrane Helix	85	105	0.73
Cytoplasmic	106	121	0.71
Transmembrane Helix	122	144	0.87
Non-Cytoplasmic	145	184	0.85
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	247	0.91
Non-Cytoplasmic	248	267	0.81
Transmembrane Helix	268	288	0.68
Cytoplasmic	289	303	0.74