YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221314552
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFWKSVVGK LWFTILSLVL IVLFILTVLL LEFIENYHVE EAENDLTQLA NKVAVILENH  60
   61 EDQALARSIT WELADNLTSI AIIQDEKNHW YSPNDKNRLS SITVEQIQHD KDLNKALKDH 120
  121 KKVSKRTGLS DTDTDNERLI VGVPYEKDGK KGMVFLSQSL LAVKDTTKHT TRYIFLAAGI 180
  181 AIVLTTFFAF FLSSRVTYPL RKMREGAQDL AKGKFDTKIP ILTQDEIGEL ATAFNQMGRQ 240
  241 LNFHINALNQ EKEQLSNILS SMADGVITIN IDGTILVTNP PAERFLQAWY YEQNMNIKEG 300
  301 DNLPPEAKEL FQNAVSTEKE QMIEMTLQGR SWVLLMSPLY AESHVRGAVA VLRDMTEERR 360
  361 LDKLREDFIA NVSHELRTPI SMLQGYSEAI VDDIASSEED RKEIAQIIYD ESLRMGRLVN 420
  421 DLLDLARMES GHTGLHYEKI NVNEFLEKII RKFSGVAKEK NIALDHDISL TEEEFMFDED 480
  481 KMEQVFTNLI DNALRHTSAG GSVSISVHSV KDGLKIDIKD SGSGIPEEDL PFIFERFYKA 540
  541 DKARTRGRAG TGLGLAIVKN IVEAHNGSIT VHSRIDKGTT FSFYIPTKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.45
Transmembrane Helix	11	31	0.84
Cytoplasmic	32	172	0.50
Transmembrane Helix	173	192	0.88
Non-Cytoplasmic	193	589	0.63