YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	QCRC_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRGKGMKFV GDSRIPAEKK PNIPKDYSEY PGKTEAFWPN FLLKEWMVGA VFLIGFLVLT  60
   61 IVHQPPLERM ADPTDTGYIP LPDWYFLFLY QLLKYEYAAG SFTVVGAMIM PGLAFGALLL 120
  121 APFLDRGTER RPWKRPVAVG MMLLAISAAV FLTWQSVATH DWAKAEEQGK ITKEADIDTN 180
  181 AEGYKVFKEQ GCISCHGDNL QGGAAGPSLV DSGLKPDEIK KIAVEGKGKM PAGVFKGNDK 240
  241 QLEELAKFIS ETTAK

Type	Start	End	Confidence
Cytoplasmic	1	45	0.91
Transmembrane Helix	46	63	0.96
Non-Cytoplasmic	64	97	0.89
Transmembrane Helix	98	121	0.89
Cytoplasmic	122	135	0.80
Transmembrane Helix	136	154	0.92
Non-Cytoplasmic	155	255	0.94