YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221320094
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKYRVRLFS VFVVCMILVF CVLGLFLQQL FETSDQRKAE EHIEKEAKYL ASLLDAGNLN  60
   61 NQANEKIIKD AGGALDVSAS VIDTDGKVLY GSNGRSADSQ KVQALVSGHE GILSTTDNKL 120
  121 YYGLSLRSEG EKTGYVLLSA SEKSDGLKGE LWGMLTASLC TAFIVIVYFY SSMTSRYKRS 180
  181 IESATNVATE LSKGNYDART YGGYIRRSDK LGHAMNSLAI DLMEMTRTQE MQRDRLLTVI 240
  241 ENIGSGLIMI DGRGFINLVN RSYAKQFHIN PNHMLRRLYH DAFEHEEVIQ LVEDIFMTET 300
  301 KKCKLLRLPI KIERRYFEVD GVPIMGPDDE WKGIVLVFHD MTETKKLEQM RKDFVANVSH 360
  361 ELKTPITSIK GFTETLLDGA MEDKEALSEF LSIILKESER LQSLVQDLLD LSKIEQQNFT 420
  421 LSIETFEPAK MLGEIETLLK HKADEKGISL HLNVPKDPQY VSGDPYRLKQ VFLNLVNNAL 480
  481 TYTPEGGSVA INVKPREKDI QIEVADSGIG IQKEEIPRIF ERFYRVDKDR SRNSGGTGLG 540
  541 LAIVKHLIEA HEGKIDVTSE LGRGTVFTVT LKRAAEKSA

Type	Start	End	Confidence
Cytoplasmic	1	7	0.71
Transmembrane Helix	8	27	0.89
Non-Cytoplasmic	28	579	0.73