YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221318233
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYIGRRLV YMIITLFVIV TVTFFLMQAA PGGPFSGEKK LPPEIEANLN AHYGLDKPLF  60
   61 VQYVSYLKSV AMWDFGPSFK YKGQSVNDLI SSGFPVSFTL GAEAILLALA LGVLFGVIAA 120
  121 LYHNKWQDYT VAILTIFGIS VPSFIMAAVL QYVFSMKLGL FPVAGWDSWA YTFLPSIALA 180
  181 SMPMAFIARL SRSSMIEVLN SDYIRTAKAK GLSRPAVTVR HAIRNALLPV VTYMGPMAAQ 240
  241 VLTGSFIIET IFGIPGLGAH FVNSITNRDY TVIMGVTVFF SVILLLCVLI VDVLYGIIDP 300
  301 RIKLSKAKKG A

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	99	0.97
Transmembrane Helix	100	122	0.91
Cytoplasmic	123	130	0.83
Transmembrane Helix	131	153	0.91
Non-Cytoplasmic	154	168	0.90
Transmembrane Helix	169	188	0.94
Cytoplasmic	189	229	0.94
Transmembrane Helix	230	254	0.77
Non-Cytoplasmic	255	272	0.78
Transmembrane Helix	273	298	0.87
Cytoplasmic	299	311	0.97