YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2633890, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.95
Transmembrane Helix	6	28	0.95
Cytoplasmic	29	48	0.96
Transmembrane Helix	49	70	0.93
Non-Cytoplasmic	71	80	0.72
Transmembrane Helix	81	97	0.96
Cytoplasmic	98	116	0.83
Transmembrane Helix	117	134	0.96
Non-Cytoplasmic	135	150	0.87
Transmembrane Helix	151	170	0.92
Cytoplasmic	171	177	0.73
Transmembrane Helix	178	196	0.95
Non-Cytoplasmic	197	202	0.82
Transmembrane Helix	203	220	0.98
Cytoplasmic	221	226	0.88
Transmembrane Helix	227	247	0.92
Non-Cytoplasmic	248	253	0.73
Transmembrane Helix	254	275	0.93
Cytoplasmic	276	299	0.88
Transmembrane Helix	300	320	0.92
Non-Cytoplasmic	321	324	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEQVILFTI LMGFLISVLL SPILIPFLRR LKFGQSIREE GPKSHQKKSG TPTMGGVMII  60
   61 LSIIVTTIVM TQKFSEISPE MVLLLFVTLG YGLLGFLDDY IKVVMKRNLG LTSKQKLIGQ 120
  121 IIIAVVFYAV YHYYNFATDI RIPGTDLSFD LGWAYFILVL FMLVGGSNAV NLTDGLDGLL 180
  181 SGTAAIAFGA FAILAWNQSQ YDVAIFSVAV VGAVLGFLVF NRDPAKVFMG DTGSLALGGA 240
  241 IVTIAILTKL EILLVIIGGV FVIETLSVIL QVISFKTTGK RIFKMSPLHH HYELVGWSEW 300
  301 RVVVTFWAAG LLLAVLGIYI EVWL