YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLVA_BACSU
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKSFSIVI AGGGSTFTPG IVLMLLDHLE EFPIRKLKLY DNDKERQDRI AGACDVFIRE  60
   61 KAPDIEFAAT TDPEEAFTDV DFVMAHIRVG KYAMRALDEQ IPLKYGVVGQ ETCGPGGIAY 120
  121 GMRSIGGVLE ILDYMEKYSP DAWMLNYSNP AAIVAEATRR LRPNSKILNI CDMPVGIEDR 180
  181 MAQILGLSSR KEMKVRYYGL NHFGWWTSIQ DQEGNDLMPK LKEHVSQYGY IPKTEAEAVE 240
  241 ASWNDTFAKA RDVQAADPDT LPNTYLQYYL FPDDMVKKSN PNHTRANEVM EGREAFIFSQ 300
  301 CDMITREQSS ENSEIKIDDH ASYIVDLARA IAYNTGERML LIVENNGAIA NFDPTAMVEV 360
  361 PCIVGSNGPE PITVGTIPQF QKGLMEQQVS VEKLTVEAWA EKSFQKLWQA LILSKTVPNA 420
  421 RVARLILEDL VEANKDFWPE LDQSPTRIS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.64
Transmembrane Helix	7	26	0.68
Non-Cytoplasmic	27	449	0.99