YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221315428
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.74
Transmembrane Helix	31	51	0.93
Non-Cytoplasmic	52	56	0.65
Transmembrane Helix	57	77	0.89
Cytoplasmic	78	85	0.65
Transmembrane Helix	86	106	0.87
Non-Cytoplasmic	107	122	0.68
Transmembrane Helix	123	144	0.94
Cytoplasmic	145	151	0.65
Transmembrane Helix	152	175	0.91
Non-Cytoplasmic	176	213	0.60
Transmembrane Helix	214	236	0.77
Cytoplasmic	237	271	0.90
Transmembrane Helix	272	292	0.85
Non-Cytoplasmic	293	297	0.77
Transmembrane Helix	298	318	0.93
Cytoplasmic	319	329	0.92
Transmembrane Helix	330	351	0.92
Non-Cytoplasmic	352	359	0.77
Transmembrane Helix	360	382	0.94
Cytoplasmic	383	393	0.82
Transmembrane Helix	394	414	0.77
Non-Cytoplasmic	415	425	0.66
Transmembrane Helix	426	446	0.92
Cytoplasmic	447	448	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAIPKTGTI SPEQKDSQEK NLFQKIWSWE IGVIPLPLYT VLAVIIILAA YYNELPANML  60
   61 GGFAIIMILG VFLGDIGQRI PILKDIGGPA ILSLFVPSFL VFYNVLNSTS LDAVTNLMKT 120
  121 SNFLYFYIAC LVVGSILGMN RIVLIQGFIR MFVPLVAGTI AAVAAGILVG FIFGYSAYDS 180
  181 FFFVVVPIIA GGIGEGILPL SIAYSQILGS SADVFVSQLV PAAIIGNVFA IICAALMKKL 240
  241 GDKRPDLNGN GRLVKSKKAN EIFNQKEAEA KIDFKLMGAG VLLACTFFIF GGLLEKFIFI 300
  301 PGAILMIISA AAVKYANILP KKMEEGAYQL YKFISSSFTW PLMVGLGILF IPLDDVASVI 360
  361 SIPFVIICIS VVIAMIGSGY FVGKLMNMYP VESAIVTCCH SGLGGTGDVA ILSASGRMGL 420
  421 MPFAQISTRL GGAGTVICAT VLLRFFTS