YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTJC_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	53	0.90
Non-Cytoplasmic	54	72	0.93
Transmembrane Helix	73	93	0.92
Cytoplasmic	94	100	0.78
Transmembrane Helix	101	120	0.91
Non-Cytoplasmic	121	142	0.87
Transmembrane Helix	143	167	0.84
Cytoplasmic	168	185	0.90
Transmembrane Helix	186	206	0.91
Non-Cytoplasmic	207	217	0.79
Transmembrane Helix	218	239	0.90
Cytoplasmic	240	245	0.86
Transmembrane Helix	246	268	0.91
Non-Cytoplasmic	269	293	0.92
Transmembrane Helix	294	313	0.96
Cytoplasmic	314	325	0.81
Transmembrane Helix	326	345	0.55
Non-Cytoplasmic	346	349	0.45
Transmembrane Helix	350	370	0.85
Cytoplasmic	371	378	0.36
Transmembrane Helix	379	397	0.52
Non-Cytoplasmic	398	402	0.59
Transmembrane Helix	403	422	0.89
Cytoplasmic	423	452	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVNQILEE KVMPIAGRIA GQRHLQALRD GIILTMPLII IGSFFLIIGN LPIPGYAEFM  60
   61 AKTFGSSWSE KLAYPVDATF EIMGLVAAFG IAYRLAEKYG VDALSAGAIS LAAFLLATPY 120
  121 QVPFMPDGAT KEIMVGGGIP LSLMGSKGLF VAMIIAMVST EIYRLIIQRN LVFKMPDGVP 180
  181 PAVSKSFVAL IPGFAVIFLI WAARLIVEAT PFESLHNIVS VLLGTPLSIL GGSLGGSLVA 240
  241 EAVKMLLWAC GLHGANIVGG VMAPIWYGAM DANRIAFQAG EELPKIFTQQ FFDIWVNIGG 300
  301 SGATLALVVT MFLRARSKQM KQLGKLAVGP AIFNINEPII FGMPIVMNPM LLLPFIITPL 360
  361 VTVTLTYIGM STGLVAKPAG IAVPWTMPPI FSGYLATGGK VSGAVMQAIN IAVSFVVYYP 420
  421 FFRMWDKQKL KEENDLELVQ TPAATDDKEA AL