YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNTP_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.62
Transmembrane Helix	7	41	0.77
Cytoplasmic	42	52	0.70
Transmembrane Helix	53	76	0.82
Non-Cytoplasmic	77	101	0.90
Transmembrane Helix	102	126	0.88
Cytoplasmic	127	133	0.86
Transmembrane Helix	134	154	0.94
Non-Cytoplasmic	155	173	0.92
Transmembrane Helix	174	194	0.94
Cytoplasmic	195	226	0.94
Transmembrane Helix	227	248	0.93
Non-Cytoplasmic	249	263	0.87
Transmembrane Helix	264	288	0.87
Cytoplasmic	289	303	0.84
Transmembrane Helix	304	326	0.84
Non-Cytoplasmic	327	346	0.75
Transmembrane Helix	347	375	0.76
Cytoplasmic	376	383	0.53
Transmembrane Helix	384	403	0.89
Non-Cytoplasmic	404	422	0.69
Transmembrane Helix	423	447	0.88
Cytoplasmic	448	448	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIVALGI LALLFLIMGL KLNTFISLLV VSFGVALALG MPFDKVVSSI EAGIGGTLGH  60
   61 IALIFGLGAM LGKLIADSGG AQRIAMTLVN KFGEKNIQWA VVIASFIIGI ALFFEVGLVL 120
  121 LIPIVFAISR ELKISILFLG IPMVAALSVT HGFLPPHPGP TAIAGEYGAN IGEVLLYGFI 180
  181 VAVPTVLIAG PLFTKFAKKI VPASFAKNGN IASLGTQKTF NLEETPGFGI SVFTAMLPII 240
  241 IMSVATIIDL LQETIGFADN GVLAFIRLIG NASTAMIISL LVAVYTMGIK RNIPVKTVMD 300
  301 SCSTAISQIG MMLLIIGGGG AFKQVLINGG VGDYVADLFK GTALSPIILA WLIAAILRIS 360
  361 LGSATVAALS TTGLVIPLLG HSDVNLALVV LATGAGSVIA SHVNDAGFWM FKEYFGLSMK 420
  421 ETFATWTLLE TIISVAGLGF ILLLSLVV