YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221317466
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.53
Transmembrane Helix	5	24	0.76
Cytoplasmic	25	30	0.50
Transmembrane Helix	31	49	0.80
Non-Cytoplasmic	50	52	0.61
Transmembrane Helix	53	71	0.86
Cytoplasmic	72	86	0.71
Transmembrane Helix	87	107	0.84
Non-Cytoplasmic	108	113	0.81
Transmembrane Helix	114	135	0.93
Cytoplasmic	136	151	0.93
Transmembrane Helix	152	170	0.95
Non-Cytoplasmic	171	179	0.64
Transmembrane Helix	180	197	0.97
Cytoplasmic	198	204	0.89
Transmembrane Helix	205	225	0.92
Non-Cytoplasmic	226	232	0.76
Transmembrane Helix	233	254	0.93
Cytoplasmic	255	262	0.92
Transmembrane Helix	263	283	0.96
Non-Cytoplasmic	284	287	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLLALLPA LFWGSIVLFN VKLGGGPYSQ TLGTTIGALI VSIVIYFFVQ PVLSLRIFIV  60
   61 GIVSGLFWSL GQANQLKSIQ LMGVSKTMPI STGMQLVSTS LFGVIVFREW STPIAITLGV 120
  121 LALIFIIVGI ILTSLEDKND KKEGEPSNLK KGILILLVST LGYLVYVVVA RLFNVSGWSA 180
  181 LLPQAIGMVV GGLVLTYRHK PFNKYAIRNI LPGLIWAGGN MFLFISQPRV GVATSFSLSQ 240
  241 MGIVISTLGG IFILREKKTK RQLIAIAIGI ILIIAAAVFL GIAKTNS