YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FHUB_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.77
Transmembrane Helix	57	81	0.88
Non-Cytoplasmic	82	114	0.72
Transmembrane Helix	115	135	0.91
Cytoplasmic	136	143	0.67
Transmembrane Helix	144	165	0.88
Non-Cytoplasmic	166	170	0.54
Transmembrane Helix	171	193	0.85
Cytoplasmic	194	201	0.56
Transmembrane Helix	202	224	0.86
Non-Cytoplasmic	225	242	0.50
Transmembrane Helix	243	269	0.79
Cytoplasmic	270	283	0.40
Transmembrane Helix	284	299	0.67
Non-Cytoplasmic	300	300	0.15
Transmembrane Helix	301	316	0.88
Cytoplasmic	317	329	0.51
Transmembrane Helix	330	350	0.89
Non-Cytoplasmic	351	356	0.66
Transmembrane Helix	357	377	0.89
Cytoplasmic	378	384	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFHFCSKHS IKSAEKSDIL KQQLIIIISN RKEVRQLSQH KNIRTASEEI QWTSRTYGAV  60
   61 IVLIAGLCLL CLGAFLSISL GAADIHLRTV WEAIFHYQPT KTSHQIIHDL RLPRTAAAAL 120
  121 VGALLAVSGA IMQGMTRNPL AEPSIMGVTS GSAFAVSIAF AFFPGLSAMG LVLWSFAGAG 180
  181 LGASTVMGIG MFSRGGLTPV KLALAGTAVT YFFTGISTAI AIRFDVAQDI SFWYAGGVAG 240
  241 VKWSGVQLLL IAGAVGLTLA FFIARSVTVL SLGDDLAKGL GQYTSAVKLV GMLIVVILTG 300
  301 AAVSIAGTIA FIGLIIPHIT RFLVGVDYRW IIPCSAVLGA VLLVFADIAA RLVNAPFETP 360
  361 VGALTSLIGV PFFFYLARRE RRGL