YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221313167
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.94
Transmembrane Helix	26	46	0.90
Non-Cytoplasmic	47	56	0.79
Transmembrane Helix	57	79	0.87
Cytoplasmic	80	102	0.91
Transmembrane Helix	103	125	0.85
Non-Cytoplasmic	126	130	0.58
Transmembrane Helix	131	150	0.87
Cytoplasmic	151	170	0.84
Transmembrane Helix	171	186	0.90
Non-Cytoplasmic	187	190	0.70
Transmembrane Helix	191	210	0.88
Cytoplasmic	211	283	0.96
Transmembrane Helix	284	302	0.92
Non-Cytoplasmic	303	308	0.63
Transmembrane Helix	309	331	0.89
Cytoplasmic	332	351	0.90
Transmembrane Helix	352	373	0.90
Non-Cytoplasmic	374	378	0.75
Transmembrane Helix	379	399	0.93
Cytoplasmic	400	408	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNMLDIWQS RLQEHIKETR TYMKYMLNDH LVIVLIFFLA GAASWYSKWI RDIPAHFPSF  60
   61 WVMAVLFSLV LTSSYVRTLL KEADLVFLLP LEAKMEPYLK QAFVYSYVSQ LFPLIALSIV 120
  121 AMPLYFAVTP GASLVSYAAV FVQLLLLKAW NQVMEWRTTF QNDRSMKRMD VIIRFAANTL 180
  181 VLYFVFQSVY MYALLVYVIM AVLYLYMSSA AKRKTFKWES HIESELRRKQ RFYRIANLFT 240
  241 DVPHLRKQAK RRAYLDFLLR LVPFEQRKTF AYMFTRAFLR SSDYLGILVR LTIVFALIIM 300
  301 YVSASPLIAA VLTVFAIFIT GIQLLPLFGH FDHLALQELY PVQKETKLKS YFSLLKTALS 360
  361 IQALLMSVAS AYAAGLTGFL YALIGSAVLI FVVLPAYMTT RLKKHGKL