YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DPPC_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPVQTDER QPEQHNQVPD EWFVLNQEKN READSVKRPS LSYTQDAWRR LKKNKLAMAG  60
   61 LFILLFLFVM AVIGPFLSPH SVVRQSLTEQ NLPPSADHWF GTDELGRDVF TRTWYGARIS 120
  121 LFVGVMAALI DFLIGVIYGG VAGYKGGRID SIMMRIIEVL YGLPYLLVVI LLMVLMGPGL 180
  181 GTIIVALTVT GWVGMARIVR GQVLQIKNYE YVLASKTFGA KTFRIIRKNL LPNTMGAIIV 240
  241 QMTLTVPAAI FAESFLSFLG LGIQAPFASW GVMANDGLPT ILSGHWWRLF FPAFFISLTM 300
  301 YAFNVLGDGL QDALDPKLRR

Type	Start	End	Confidence
Cytoplasmic	1	56	0.98
Transmembrane Helix	57	77	0.95
Non-Cytoplasmic	78	118	0.95
Transmembrane Helix	119	142	0.90
Cytoplasmic	143	155	0.79
Transmembrane Helix	156	175	0.88
Non-Cytoplasmic	176	179	0.62
Transmembrane Helix	180	199	0.85
Cytoplasmic	200	229	0.84
Transmembrane Helix	230	263	0.69
Non-Cytoplasmic	264	285	0.57
Transmembrane Helix	286	307	0.87
Cytoplasmic	308	320	0.60