YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CZCD_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHNHNEGAN KKVLLISFIM ITGYMIIEAI GGFLTNSLAL LSDAGHMLSD SISLMVALIA  60
   61 FTLAEKKANH NKTFGYKRFE ILAAVINGAA LILISLYIIY EAIERFSNPP KVATTGMLTI 120
  121 SIIGLVVNLL VAWIMMSGGD TKNNLNIRGA YLHVISDMLG SVGAILAAIL IIFFGWGWAD 180
  181 PLASIIVAIL VLRSGYNVTK DSIHILMEGT PENIDVSDII RTIEGTEGIQ NIHDLHIWSI 240
  241 TSGLNALSCH AVVDDQLTIS ESENILRKIE HELEHKGITH VTIQMETEAH NHDNAILCQP 300
  301 KMEKQRDHHH H

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	34	0.91
Non-Cytoplasmic	35	43	0.77
Transmembrane Helix	44	64	0.91
Cytoplasmic	65	80	0.87
Transmembrane Helix	81	100	0.95
Non-Cytoplasmic	101	112	0.87
Transmembrane Helix	113	136	0.88
Cytoplasmic	137	149	0.91
Transmembrane Helix	150	173	0.88
Non-Cytoplasmic	174	177	0.66
Transmembrane Helix	178	197	0.80
Cytoplasmic	198	311	0.88