YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC530.15c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.99
Transmembrane Helix	77	98	0.93
Non-Cytoplasmic	99	109	0.80
Transmembrane Helix	110	131	0.91
Cytoplasmic	132	141	0.80
Transmembrane Helix	142	160	0.93
Non-Cytoplasmic	161	166	0.82
Transmembrane Helix	167	188	0.92
Cytoplasmic	189	199	0.78
Transmembrane Helix	200	222	0.90
Non-Cytoplasmic	223	230	0.82
Transmembrane Helix	231	250	0.94
Cytoplasmic	251	300	0.96
Transmembrane Helix	301	323	0.88
Non-Cytoplasmic	324	347	0.87
Transmembrane Helix	348	370	0.90
Cytoplasmic	371	385	0.94
Transmembrane Helix	386	405	0.95
Non-Cytoplasmic	406	410	0.86
Transmembrane Helix	411	432	0.91
Cytoplasmic	433	441	0.72
Transmembrane Helix	442	462	0.82
Non-Cytoplasmic	463	477	0.77
Transmembrane Helix	478	502	0.91
Cytoplasmic	503	516	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERTSESSS ESASFDLEKQ QSNHHDRYQS SVSSELEESL KKYPVISNPQ DFIVTLDGPD  60
   61 DPDLAVNWPL AKKLRNVAVM GSACLCAGFG SSIFSGAVPE VMVKFHVCRT VALLGISLYV 120
  121 LGFASGPVVW APMCELFGRR RPMIIAVFIF CIFHIAVATA KDIQTVMICR FFCGFFGSSP 180
  181 ITTVAGSFSD MFSARTRGLV IAVYSAIIFN GPLMSPIVGG FIGKSYLGWR WTSYITAIMG 240
  241 FTAFTSMIIF HRETYTRTIT EIRASKVRVL TGNYCLHAKS EEEPLEFSYF FHKYFTFPLR 300
  301 LLIFEPILLV VSTYTAFVYG ILYGLLEAYP VIFGESRKWR LGVESLPYLA IFVGVCIGCS 360
  361 SVALFQPYYF KKMDENKGRP VPEARLPSMM IGCIVFPIGI FWLAWTGNYP WIHWIVPTLA 420
  421 GSFIGFGIIT IFQQTINYII DCYSGCSASA IAANTLLRSS FGAAFPLFTT QMFNNLGIGW 480
  481 AGSLVGFVAV GLIPVPFMLF LYGPKLRQMS KHCLKD