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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cox1101
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.32
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPILTCRYKI LFLYNLRNCF TFQNQRCLIP YGTTTTIRWY NANFQAVQNN FSDYKNELIS  60
   61 SHRPEASSLL DFLVKDQKKS GDISLHTKFN LYVDDLLKKS EKGQIKKFIN DIKKDLATES 120
  121 QLPLSAPFKD ESTRTMTDPQ VLAYIHQSMP YQYASLYSVL TDLKIVNSDV SCKSQHILDC 180
  181 GKGPGIGALA SYSVFPTPNS VSIVEENPFL KKIIYDIHHN IYPSTSPNPT SPVTLNRLPL 240
  241 GKKDSYTLVI ASNKLLEMKS EKELFDYLRS LWSLVSNDGG LLVLCERGTK RGFSLIQRAR 300
  301 TFLLQKSKNT SDKQFNAHIV APCPHDGRCP IDIENGVRAN ICSFKQHFFL SPFSRLYVPR 360
  361 SHRRSSDRSH YSYVVIQKGI TRPLNNTTQR FKNDEDLLEN VNVTSPTLKN WPRIIRPPLK 420
  421 RDGHVIIDVC DSDARLRRNI VPKSQGKLAY RLARKSAWGD LFPLEGKVQS TSPSSKITKH 480
  481 LKDASSTYSI NPPSYNKPKV ERNTTADPIF VGKRFYSTNR HKAFSRFADF NSHRFPCIFT 540
  541 SFSCYNCISG TRKYSRQYSR DKFHYNQRTT IYYLVAISIF ALGLTYAAVP LYRLFCSKTG 600
  601 YGGTLNTDQS RMNAERMVPR KDNKRIRVTF NGDVAGNLSW KLWPQQREIY VLPGETALGF 660
  661 YTAENTSDHD IVGVATYNIV PGQAAVYFSK VACFCFEEQK LDAHEKVDLP VFFFIDPEFA 720
  721 DDPNMKDIDD ILLSYTFFEA RYDTNGNLLT KLN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle