YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC227.01c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALIEDLNHF INYFPLVLRL FFLVVFGLYS FTLILHLLVI NRVDVFSLLH TPLPVNRSQQ  60
   61 ANAPLWQLSF SLSILGTLLF VIAESLYLIS GSDELAYVPV FIFGVIVFMP VHKFWFFQRK 120
  121 VFTRQCLRIL GGSYRPDYKF PDVIFSDLLT SYSRVIADLW LAGAILIYVT DSPNNSHRKQ 180
  181 YENEVIMSMI AAYPYAIRFR QCLIERSSAD NSSDKFWSTL NSIKYFTAFP AIFLGIFAKK 240
  241 RFSFLWFLWN TSSAINSTYS FWWDVSMDWS LPFFKQPLSI QNWKFGVRRL FPTFTFAVVS 300
  301 AIDFVLRMAW VVRVLPEHQS AFFTTDFGIF IMQFLEVFRR CVWVFFRIEA EASKSLAYVN 360
  361 ISDRSDIPTI HPD

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.80
Transmembrane Helix	17	40	0.90
Cytoplasmic	41	64	0.79
Transmembrane Helix	65	88	0.86
Non-Cytoplasmic	89	94	0.78
Transmembrane Helix	95	116	0.93
Cytoplasmic	117	243	0.77
Transmembrane Helix	244	263	0.81
Non-Cytoplasmic	264	289	0.62
Transmembrane Helix	290	311	0.85
Cytoplasmic	312	373	0.64