YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC589.12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.86
Transmembrane Helix	15	37	0.87
Non-Cytoplasmic	38	70	0.96
Transmembrane Helix	71	93	0.91
Cytoplasmic	94	100	0.88
Transmembrane Helix	101	122	0.93
Non-Cytoplasmic	123	128	0.92
Transmembrane Helix	129	148	0.90
Cytoplasmic	149	160	0.79
Transmembrane Helix	161	181	0.92
Non-Cytoplasmic	182	190	0.79
Transmembrane Helix	191	209	0.88
Cytoplasmic	210	278	0.94
Transmembrane Helix	279	306	0.75
Non-Cytoplasmic	307	312	0.61
Transmembrane Helix	313	331	0.91
Cytoplasmic	332	340	0.65
Transmembrane Helix	341	358	0.92
Non-Cytoplasmic	359	364	0.82
Transmembrane Helix	365	386	0.89
Cytoplasmic	387	396	0.88
Transmembrane Helix	397	415	0.95
Non-Cytoplasmic	416	432	0.90
Transmembrane Helix	433	451	0.96
Cytoplasmic	452	466	0.87
Transmembrane Helix	467	488	0.93
Non-Cytoplasmic	489	508	0.90
Transmembrane Helix	509	528	0.92
Cytoplasmic	529	533	0.72
Transmembrane Helix	534	552	0.94
Non-Cytoplasmic	553	558	0.74
Transmembrane Helix	559	579	0.89
Cytoplasmic	580	587	0.77
Transmembrane Helix	588	609	0.89
Non-Cytoplasmic	610	621	0.84
Transmembrane Helix	622	642	0.87
Cytoplasmic	643	671	0.89
Transmembrane Helix	672	688	0.89
Non-Cytoplasmic	689	704	0.86
Transmembrane Helix	705	723	0.46
Cytoplasmic	724	971	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKTSSLVF SAQYVALVHT ICSFAAFFIP LALALYTHYY QVVKNEFYGY PEEWFPSVSA  60
   61 TIGDWYPERS VFQWLIALTA TPRLLVLLLW FTLSGISRPS VIITTALGVL RTALCGGWVY 120
  121 VTSTDDHDWH DIFMIGYLIS NAPWFILVSK CSPVNSMASR IRNIGSALFV LTIFPLIYWY 180
  181 IQHKFKHIPG AYTVYAFFEW SLILWDILFD SALYWDFKPL VFNLHTSKTY SNPSSFATRK 240
  241 KEKGEHLSYA EAAAVGTQAK NIKKDSNVKC SKKQILFSLL YFSSEVYLSF VFWSVLTSLG 300
  301 LLVWYFPLWH MGISGYEACI LFELSPFLLG IPLLRKFASK VPVIFLFLNV IGIAAYKLED 360
  361 PVHRLFVTAF SVCCECLAWT SLFSNISPEN LAIERKISTF LFGLLASSIA KYSFFSNNPI 420
  421 WPILNETNGG KQIPALIVGI IACLIFAIFH VQQTTANAVE HFKLRKITAL SAALSLGTVL 480
  481 FCLHTFLCDS TVLMTWSWDG YPIKGPQPYP HGAVSIVVSI CAVLVAPYLY QSGAFMLIGF 540
  541 VLACFGSYFM YINHGWCSYL GGLIFTSYVL IYSFASIRIS SFYSPAKVWG GAFLVYILYS 600
  601 LAHVWVVAYE FVPGGPILRE RTSYILIFIG WNLAALVPAY SGESKEPNKA DSSVVDIKQS 660
  661 DSSYRRRSFK KSLLTGFCLA LMALKFAIQN MPPYDYTPYH PNEKLFTAGI WTIHFGLDNF 720
  721 MYASENRIRD AVRDMELDVF GLLESDTQRL IMGFRDLTQV LAHDLGMYAD YGPGPDKHTW 780
  781 GAALLSKFPI VNSTHHLLPS PQGELAPAIH ATLDVYGELI DVVVSHNGQY ESQLDRRLQS 840
  841 TELARIMRES PRPLVFLGYV VSNVGQEPQT ILTRDTGMLD IEPADYDRWC QYIFYRGVKR 900
  901 IGYARLHRST ITDTELQTGK FLVTKDLGRN VRIDKEHVPE SHRYPSLFEG TGVNGHYYDN 960
  961 NLVVHEPWYY D