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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pmr-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSVAPPGV PGKDKEAPQS TAAIFRVQGN TTTTTTSTTS TNGIAQKHQP TTPLVKAEVS  60
   61 TNHISKDRSK SISKDDIMIE TLTSEQAASH EVVPCTHQLR TNLEEGLTTA EATRRRQYHG 120
  121 YNEFDVGEEE PIYKKYLEQF QNPLILLLLA SAFVSIVMKQ YDDAISITVA VVIVVTVGFV 180
  181 QEYRSEKTLE QLTKLVPPTC HVLRDGKEAM MLARELVPGD IVLLNTGDRI PSDLRIAESF 240
  241 SLQIDESSLT GETEPKHKET RSVPAASATG SDVEHLTCIA FMGTLVCAGR GRGIVISTAA 300
  301 NSQFGEVVKM MMGEESPKTP LQKSMDDLGK QLSIYSFGVI AVIFLIGMFQ GRNVVDMFTI 360
  361 GVSLAVAAIP EGLPIVVAVT LAIGVMRMAK RRAVVKKMPA VETLGCVTVI CSDKTGTLTK 420
  421 NEMTAQAIAT PEGKLAEITG IGYSAEGGVV QYQGEQVHQW THPEFARIIE AGLVCNNATI 480
  481 EADKLIGQPT EGAIVVLAKK AQLEGVRSEY KRLREMPFSS DTKWMGVQCA DAHGQNVYFI 540
  541 KGALDRVLDQ CGTYYSSDNQ RKQCDQYSRQ HILEIGKELG QKGLRVLGLA RGESMQSLMF 600
  601 LGMIGMMDPP RPGAADAISI VKASGVDVKL ITGDAMETAQ SIGQSLGILS SSDSCLSGQQ 660
  661 VDQMSDHDLE LVIRQVTVFY RASPRHKLKI VKALQALGEV VAMTGDGVND AVALKKADIG 720
  721 VAMGVCGTDV CKEAADMILC DDDFSTMTAA IEEGKAIYHN ITNFVRFQLS TSVAALSLIA 780
  781 ASTMFKFDNP LNAMQILWIN IIMDGPPAQS LGVEPVDDDI IRQRPRNTKQ PMLTGKLIAD 840
  841 ILASAAIIVV GTLSVFYKEM SADNKVTPRD TTMTFTCFVL FDMWNALSCR SSRKMIWQIG 900
  901 LRRNRMFSLA VSASLICQLL VIYWAPLQHI FQTEALSLFD LIFLTTITSS VFIFNETRKY 960
  961 FSLRSKSLNH DPLSVSGI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle