YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-41
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLIILLLV LSISNTSGFN YLVVSPAFGH SHSTFMGKLA DSLTEAGHNV TVLSIIISSK  60
   61 FRNISYTKST KDIVVVETTT EQDQLTENME NDDFARYWTQ EGTMLETIPS YLMFLKMAED 120
  121 GYKTFRDHAL PQMDYLKNNR PQYDAVFFES FFFMGKAIQE YLEIPVFLPV TSITHDYRFA 180
  181 ELIGEPVSPS YLSGYFTNFG NIMNFQERLT NTISYYLGQI LIAFPNWKTL QDPSKDLLVE 240
  241 SEYHRAPYVF INSNPYIDFP RPLLSKTIEI GGITVDVKKL KSEKVDEKWD NILKKRPHNV 300
  301 LISFGSMFKS IYMPDFYKEN MVKVMKSFKN VSFIWKYESE ETSFANGAEN IIFSKWVPQT 360
  361 ALLADSRLSA FFTHGGLGSV NELSYLGKPA LLCPLFADQI RNSKMLTRHN GSIEISKFNL 420
  421 ENYNTLRSAL HSILFAESYS ENAEKLAKKL EYQPTKPKEL FVRHAEFAAR FGEQPAQDSN 480
  481 LRTMGFAAYY LLDVIAFLTS FVLLVIFVVF IMIRQIVKLL TIKSKRD

Type	Start	End	Confidence
Signal Peptide	1	18	0.98
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	488	0.99
Transmembrane Helix	489	513	0.90
Cytoplasmic	514	527	0.94