YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cca-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.90
Transmembrane Helix	130	150	0.58
Non-Cytoplasmic	151	172	0.63
Transmembrane Helix	173	195	0.78
Cytoplasmic	196	204	0.53
Transmembrane Helix	205	223	0.75
Non-Cytoplasmic	224	263	0.80
Transmembrane Helix	264	288	0.86
Cytoplasmic	289	390	0.99
Transmembrane Helix	391	412	0.87
Non-Cytoplasmic	413	428	0.85
Transmembrane Helix	429	451	0.94
Cytoplasmic	452	654	0.98
Transmembrane Helix	655	672	0.53
Non-Cytoplasmic	673	682	0.45
Transmembrane Helix	683	706	0.67
Cytoplasmic	707	707	0.38
Transmembrane Helix	708	730	0.55
Non-Cytoplasmic	731	776	0.71
Transmembrane Helix	777	799	0.93
Cytoplasmic	800	822	0.87
Transmembrane Helix	823	840	0.93
Non-Cytoplasmic	841	901	0.93
Transmembrane Helix	902	924	0.90
Cytoplasmic	925	1159	0.96
Transmembrane Helix	1160	1178	0.78
Non-Cytoplasmic	1179	1194	0.65
Transmembrane Helix	1195	1219	0.74
Cytoplasmic	1220	1228	0.67
Transmembrane Helix	1229	1250	0.82
Non-Cytoplasmic	1251	1295	0.56
Transmembrane Helix	1296	1318	0.89
Cytoplasmic	1319	1353	0.58
Transmembrane Helix	1354	1369	0.44
Non-Cytoplasmic	1370	1399	0.80
Transmembrane Helix	1400	1422	0.91
Cytoplasmic	1423	1489	0.93
Transmembrane Helix	1490	1511	0.89
Non-Cytoplasmic	1512	1522	0.80
Transmembrane Helix	1523	1543	0.89
Cytoplasmic	1544	1552	0.82
Transmembrane Helix	1553	1573	0.80
Non-Cytoplasmic	1574	1622	0.81
Transmembrane Helix	1623	1643	0.87
Cytoplasmic	1644	1659	0.80
Transmembrane Helix	1660	1678	0.64
Non-Cytoplasmic	1679	1711	0.78
Transmembrane Helix	1712	1733	0.86
Cytoplasmic	1734	1885	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQPVPELR SFQSLSKYAG GPRSVLGRRT SAITVNRRQS QSTRRHEDVE ALGSIEGSKE  60
   61 TLQLSEHGRL ASSSEASPSR WEGRQIEWGN EEQIEEESEL PYPGFAEPAL RCFYQARPPR 120
  121 KWALQMVMSP WFDRITMAVI MINCVTLGMY RPCEDGPDCD TYRCQILDII DNCIFVYFAF 180
  181 EMVIKIMALG FYGPAAYMSD TWNRLDFFIV MAGIAEFVLH EYLGGNINLT AIRTVRVLRP 240
  241 LRAVNRIPSM RILVNLLLDT LPMLGNVLLL CFFVFFIFGI VGVQLWAGLL RNRCVINLPK 300
  301 TISENQSALF NNVKLTRFYI PEDTSLEYIC SQPDANGLHT CSNLPPYTVD GVKCNLTLDE 360
  361 YDKVTNDSCI NWNIYYNECQ VMQRNPFQGS VSFDNIGFAW VAIFLVISLE GWTDIMYYVQ 420
  421 DAHSFWNWIY FVLLIVIGAF FMINLCLVVI ATQFAETKRR ETERMLQERK MLLNRDSISC 480
  481 TGSEIGGASS KEEGDTVYAA FVRFIGHTFR RTKRAAKKKY TAYMEERAER KSSERQQRRK 540
  541 SKLDDMATLS RIEEKAEDEE DETTITRENG DDQIEQNGDG VRIKRVKIEE EPKIKIGNGN 600
  601 SNGPHYKHSS SDEESDEDGE EDQVYDGEEA KKKSTPSKLW WFREKIQKFV ICDHFTRGIL 660
  661 VAILVNTLSM GVEYHQQPEI LTVILEYSNL FFTALFALEM LLKIIASGLF GYLADGFNLF 720
  721 DGGIVALSVL ELFQEGKGGL SVLRTFRLLR ILKLVRFMPA LRYQLVVMLR TMDNVTVFFG 780
  781 LLVLFIFIFS ILGMNLFGCK FCKVEEKFLG GLAKKCERKN FDTLLWALIT VTLGMVLFGC 840
  841 KFCNHPDTGL QCTSAQVISS ICECDRMNFD NFLFATVTVF QILTQEDWNM VLFNGMAQTN 900
  901 PWAALYFVAL MTFGNYVLFN LLVAILVEGF QESKEEEKRQ LEEDARKQAV EEEDERKREL 960
  961 ELIIAKTTSP AFNNGVAPAE CTCQRPSSPE ESPSPRLLSA NYHPSPERKH SANLDAIIDK1020
 1021 RLVLRNSAPF DRSPVSEGRD DSRLNRHASL VLPVANGVPY RRQRVHSWSG LCHHFNPNCP1080
 1081 VHGRRALIET YAREKFLEAS QELKQALAEE EKRNEAKQNT FVRKLLKKTC LHNRTEFSLF1140
 1141 LMGPKNPLRI KCLQTTQKKW FDYTVLFFIG INCITLAMER PSIPPDSFER QFLHISGYIF1200
 1201 TVIFTGEMMM KVIANGCFIG QAAYFKDGWN ILDGILVVIS LINIAFELLA TGDSPKIFGV1260
 1261 IRVLRLLRAL RPLRVINRAP GVKLVVMTLI SSLKPIGNIV LICCTFFIIF GILGVQLFKG1320
 1321 MMYHCIGPEV GNVTTKADCI EDYRNKWVNH RYNFDNLGQA LMSLFVLSSK DGWVSIMYQG1380
 1381 IDAVGVDVQP IENYNEWRMI YFISFLLLVG FFVLNMFVGV VVENFHKCKE ALEKEMREKE1440
 1441 KEKRLKRKLK RQKFEESMAG KRKKMERNYP YYHDYGHTRL FLHGIVTSKY FDLAIAAVIG1500
 1501 INVISMAMEF YMMPMGLKYV LKALNYFFTA VFTLEAAMKL IALGFKRFFI EKWNRLDMFI1560
 1561 VILSIAGIIF EEFEALELPI NPTIIRVMRV LRIARVLKLL KMAKGIRSLL DTVGEALPQV1620
 1621 GNLGSLFFLL FFIFAALGVE LFGKLECSED HPCDGLGEHA HFKNFGMAFL TLFRIATGDN1680
 1681 WNGIMKDALR DDCDSSDHCE TNCCVDPILA PCFFVIFVLI SQFVLVNVVV AVLMKHLEES1740
 1741 NKRDAEGPAE PTGENIENEI TKSDDDEIVE EHEPLAIEHV KEGELDEEEE TEEGPTTQIP1800
 1801 DGHGGIKRLS MQVLEQELIE VERHLEERYR RASECLGGEL QPLNPGEIED LDDPEFRPRS1860
 1861 RSHRPRARTN SALSNKSRGS HKSAL