YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cca-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.90
Transmembrane Helix	130	150	0.58
Non-Cytoplasmic	151	172	0.63
Transmembrane Helix	173	195	0.78
Cytoplasmic	196	204	0.53
Transmembrane Helix	205	223	0.75
Non-Cytoplasmic	224	263	0.80
Transmembrane Helix	264	288	0.86
Cytoplasmic	289	390	0.99
Transmembrane Helix	391	412	0.87
Non-Cytoplasmic	413	428	0.85
Transmembrane Helix	429	451	0.94
Cytoplasmic	452	654	0.98
Transmembrane Helix	655	672	0.53
Non-Cytoplasmic	673	682	0.45
Transmembrane Helix	683	706	0.67
Cytoplasmic	707	707	0.38
Transmembrane Helix	708	730	0.54
Non-Cytoplasmic	731	776	0.71
Transmembrane Helix	777	799	0.93
Cytoplasmic	800	819	0.91
Transmembrane Helix	820	837	0.89
Non-Cytoplasmic	838	854	0.90
Transmembrane Helix	855	878	0.90
Cytoplasmic	879	1111	0.98
Transmembrane Helix	1112	1130	0.77
Non-Cytoplasmic	1131	1146	0.65
Transmembrane Helix	1147	1171	0.74
Cytoplasmic	1172	1180	0.68
Transmembrane Helix	1181	1202	0.82
Non-Cytoplasmic	1203	1247	0.56
Transmembrane Helix	1248	1270	0.89
Cytoplasmic	1271	1305	0.58
Transmembrane Helix	1306	1321	0.45
Non-Cytoplasmic	1322	1351	0.81
Transmembrane Helix	1352	1374	0.91
Cytoplasmic	1375	1456	0.94
Transmembrane Helix	1457	1478	0.89
Non-Cytoplasmic	1479	1489	0.80
Transmembrane Helix	1490	1510	0.89
Cytoplasmic	1511	1519	0.82
Transmembrane Helix	1520	1540	0.80
Non-Cytoplasmic	1541	1589	0.81
Transmembrane Helix	1590	1610	0.87
Cytoplasmic	1611	1626	0.80
Transmembrane Helix	1627	1645	0.64
Non-Cytoplasmic	1646	1678	0.78
Transmembrane Helix	1679	1700	0.86
Cytoplasmic	1701	1852	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQPVPELR SFQSLSKYAG GPRSVLGRRT SAITVNRRQS QSTRRHEDVE ALGSIEGSKE  60
   61 TLQLSEHGRL ASSSEASPSR WEGRQIEWGN EEQIEEESEL PYPGFAEPAL RCFYQARPPR 120
  121 KWALQMVMSP WFDRITMAVI MINCVTLGMY RPCEDGPDCD TYRCQILDII DNCIFVYFAF 180
  181 EMVIKIMALG FYGPAAYMSD TWNRLDFFIV MAGIAEFVLH EYLGGNINLT AIRTVRVLRP 240
  241 LRAVNRIPSM RILVNLLLDT LPMLGNVLLL CFFVFFIFGI VGVQLWAGLL RNRCVINLPK 300
  301 TISENQSALF NNVKLTRFYI PEDTSLEYIC SQPDANGLHT CSNLPPYTVD GVKCNLTLDE 360
  361 YDKVTNDSCI NWNIYYNECQ VMQRNPFQGS VSFDNIGFAW VAIFLVISLE GWTDIMYYVQ 420
  421 DAHSFWNWIY FVLLIVIGAF FMINLCLVVI ATQFAETKRR ETERMLQERK MLLNRDSISC 480
  481 TGSEIGGASS KEEGDTVYAA FVRFIGHTFR RTKRAAKKKY TAYMEERAER KSSERQQRRK 540
  541 SKLDDMATLS RIEEKAEDEE DETTITRENG DDQIEQNGDG VRIKRVKIEE EPKIKIGNGN 600
  601 SNGPHYKHSS SDEESDEDGE EDQVYDGEEA KKKSTPSKLW WFREKIQKFV ICDHFTRGIL 660
  661 VAILVNTLSM GVEYHQQPEI LTVILEYSNL FFTALFALEM LLKIIASGLF GYLADGFNLF 720
  721 DGGIVALSVL ELFQEGKGGL SVLRTFRLLR ILKLVRFMPA LRYQLVVMLR TMDNVTVFFG 780
  781 LLVLFIFIFS ILGMNLFGCK FCKVEEKFLG GLAKKCERKN FDTLLWALIT VFQILTQEDW 840
  841 NMVLFNGMAQ TNPWAALYFV ALMTFGNYVL FNLLVAILVE GFQESKEEEK RQLEEDARKQ 900
  901 AVEEEDERKR ELELIIAKTT SPAFNNGVAP AECTCQRPSS PEESPSPRLL SANYHPSPER 960
  961 KHSANLDAII DKRLVLRNSA PFDRSPVSEG RDDSRLNRHA SLVLPVANGV PYRRQRVHSW1020
 1021 SGLCHHFNPN CPVHGRRALI ETYAREKFLE ASQELKQALA EEEKRNEAKQ NTFVRKLLKK1080
 1081 TCLHNRTEFS LFLMGPKNPL RIKCLQTTQK KWFDYTVLFF IGINCITLAM ERPSIPPDSF1140
 1141 ERQFLHISGY IFTVIFTGEM MMKVIANGCF IGQAAYFKDG WNILDGILVV ISLINIAFEL1200
 1201 LATGDSPKIF GVIRVLRLLR ALRPLRVINR APGVKLVVMT LISSLKPIGN IVLICCTFFI1260
 1261 IFGILGVQLF KGMMYHCIGP EVGNVTTKAD CIEDYRNKWV NHRYNFDNLG QALMSLFVLS1320
 1321 SKDGWVSIMY QGIDAVGVDV QPIENYNEWR MIYFISFLLL VGFFVLNMFV GVVVENFHKC1380
 1381 KEALEKEMRE KEKEKRLKRK LKRQKFEESM AGKRKKNRIV WAGSAIKSIF SVERNYPYYH1440
 1441 DYGHTRLFLH GIVTSKYFDL AIAAVIGINV ISMAMEFYMM PMGLKYVLKA LNYFFTAVFT1500
 1501 LEAAMKLIAL GFKRFFIEKW NRLDMFIVIL SIAGIIFEEF EALELPINPT IIRVMRVLRI1560
 1561 ARVLKLLKMA KGIRSLLDTV GEALPQVGNL GSLFFLLFFI FAALGVELFG KLECSEDHPC1620
 1621 DGLGEHAHFK NFGMAFLTLF RIATGDNWNG IMKDALRDDC DSSDHCETNC CVDPILAPCF1680
 1681 FVIFVLISQF VLVNVVVAVL MKHLEESNKR DAEGPAEPTG ENIENEITKS DDDEIVEEHE1740
 1741 PLAIEHVKEG ELDEEEETEE GPTTQIPDGH GGIKRLSMQV LEQELIEVER HLEERYRRAS1800
 1801 ECLGGELQPL NPGEIEDLDD PEFRPRSRSH RPRARTNSAL SNKSRGSHKS AL