YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ser-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRNYTDSVQ EMVLRAIDSI RDSVINASSA VSTTTLPPLD IPMTSMKPPS IIPTVELVLG  60
   61 TITYLVIIAM TVVGNTLVVV AVFSYRPLKK VQNYFLVSLA ASDLAVAIFV MPLHVVTFLA 120
  121 GGKWLLGVTV CQFFTTADIL LCTSSILNLC AIALDRYWAI HNPINYAQKR TTKFVCIVIV 180
  181 IVWILSMLIS VPPIIGWNNW QENMMEDSCG LSTEKAFVVF SAAGSFFLPL LVMVVVYVKI 240
  241 FISARQRIRT NRGRSALMRI QNAEGDDDYR KMSIKRASVE SARTSSRVGE KTPLVIADGQ 300
  301 TTVTTLAAHS TDGGSLPKDE TTKHMKYHNN GSCKVKVKDV KEDEGNPNPT AVLRKREKIS 360
  361 VAKEKRAAKT IAVIIFVFSF CWLPFFVAYV IRPFCETCKL HAKVEQAFTW LGYINSSLNP 420
  421 FLYGILNLEF RRAFKKILCP KAVLEQRRRR MSAQP

Type	Start	End	Confidence
Cytoplasmic	1	19	0.55
Transmembrane Helix	20	39	0.49
Non-Cytoplasmic	40	60	0.86
Transmembrane Helix	61	83	0.92
Cytoplasmic	84	93	0.84
Transmembrane Helix	94	116	0.90
Non-Cytoplasmic	117	133	0.77
Transmembrane Helix	134	154	0.91
Cytoplasmic	155	173	0.87
Transmembrane Helix	174	195	0.96
Non-Cytoplasmic	196	217	0.93
Transmembrane Helix	218	242	0.87
Cytoplasmic	243	369	0.99
Transmembrane Helix	370	391	0.90
Non-Cytoplasmic	392	406	0.95
Transmembrane Helix	407	427	0.73
Cytoplasmic	428	455	0.77