YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ser-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDDFSQEMV LRAIDSIRDS VINASSAVST TTLPPLDIPM TSMKPPSIIP TVELVLGTIT  60
   61 YLVIIAMTVV GNTLVVVAVF SYRPLKKVQN YFLVSLAASD LAVAIFVMPL HVVTFLAGGK 120
  121 WLLGVTVCQF FTTADILLCT SSILNLCAIA LDRYWAIHNP INYAQKRTTK FVCIVIVIVW 180
  181 ILSMLISVPP IIGWNNWQEN MMEDSCGLST EKAFVVFSAA GSFFLPLLVM VVVYVKIFIS 240
  241 ARQRIRTNRG RSALMRIQNA EGDDDYRKMS IKRASVESAR TSSRTDGGSL PKDETTKHMK 300
  301 YHNNGSCKVK VKDVKEDEGN PNPTAVLRKR EKISVAKEKR AAKTIAVIIF VFSFCWLPFF 360
  361 VAYVIRPFCE TCKLHAKVEQ AFTWLGYINS SLNPFLYGIL NLEFRRAFKK ILCPKAVLEQ 420
  421 RRRRMSAQP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.60
Transmembrane Helix	21	38	0.61
Non-Cytoplasmic	39	57	0.87
Transmembrane Helix	58	80	0.92
Cytoplasmic	81	90	0.84
Transmembrane Helix	91	113	0.90
Non-Cytoplasmic	114	130	0.77
Transmembrane Helix	131	151	0.91
Cytoplasmic	152	170	0.87
Transmembrane Helix	171	192	0.96
Non-Cytoplasmic	193	214	0.93
Transmembrane Helix	215	239	0.87
Cytoplasmic	240	343	0.98
Transmembrane Helix	344	365	0.90
Non-Cytoplasmic	366	380	0.95
Transmembrane Helix	381	401	0.73
Cytoplasmic	402	429	0.77