YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ser-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRNYTDSVQ EMVLRAIDSI RDSVINASSA VSTTTLPPLD IPMTSMKPPS IIPTVELVLG  60
   61 TITYLVIIAM TVVGNTLVVV AVFSYRPLKK VQNYFLVSLA ASDLAVAIFV MPLHVVTFLA 120
  121 GGKWLLGVTV CQFFTTADIL LCTSSILNLC AIALDRYWAI HNPINYAQKR TTKFVCIVIV 180
  181 IVWILSMLIS VPPIIGWNNW QENMMEDSCG LSTEKAFVVF SAAGSFFLPL LVMVVVYVKI 240
  241 FISARQRIRT NRGRSALMRI QNAEGDDDYR KMSIKRASVE SARTSSRTDG GSLPKDETTK 300
  301 HMKYHNNGSC KVKVKDVKED EGNPNPTAVL RKREKISVAK EKRAAKTIAV IIFVFSFCWL 360
  361 PFFVAYVIRP FCETCKLHAK VEQAFTWLGY INSSLNPFLY GILNLEFRRA FKKILCPKAV 420
  421 LEQRRRRMSA QP

Type	Start	End	Confidence
Cytoplasmic	1	19	0.55
Transmembrane Helix	20	39	0.49
Non-Cytoplasmic	40	60	0.86
Transmembrane Helix	61	83	0.92
Cytoplasmic	84	93	0.84
Transmembrane Helix	94	116	0.90
Non-Cytoplasmic	117	133	0.77
Transmembrane Helix	134	154	0.91
Cytoplasmic	155	173	0.87
Transmembrane Helix	174	195	0.96
Non-Cytoplasmic	196	217	0.93
Transmembrane Helix	218	242	0.87
Cytoplasmic	243	346	0.98
Transmembrane Helix	347	368	0.90
Non-Cytoplasmic	369	383	0.95
Transmembrane Helix	384	404	0.73
Cytoplasmic	405	432	0.77