YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36079
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVGSVIMAV ITTVTQDQIP QLIDAVNVTI GGHGVERRFG DGEIYLLFSV FAAISSMAIF  60
   61 TFMLMPSQDV SNCIEPSDKV VSFKDGMKLM AETLKSSKMF KLAPTFLLTG MYTAFWVSIY 120
  121 PTSLTFNMHN SKMIYLPAIY GFGVGVGETI MGIIISTLSK RIKDFGLKPT MLIGSVLTTV 180
  181 FCFVALLSTP FDATVTPSHE QPLLFQPSQV TVFLIAIIGG MSDCCLCSVR SVICALAMPK 240
  241 RRAQAFSVSK IYQSLGSCFI FFLSPFLNLY HYVIGIPLLC VLSCILFFRQ ARQTQVMERK 300
  301 LTQELEESEK RRMAKELEAQ MQKI

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.81
Transmembrane Helix	44	64	0.87
Cytoplasmic	65	99	0.90
Transmembrane Helix	100	120	0.84
Non-Cytoplasmic	121	135	0.83
Transmembrane Helix	136	158	0.90
Cytoplasmic	159	169	0.83
Transmembrane Helix	170	189	0.94
Non-Cytoplasmic	190	209	0.87
Transmembrane Helix	210	234	0.86
Cytoplasmic	235	245	0.90
Transmembrane Helix	246	264	0.91
Non-Cytoplasmic	265	270	0.65
Transmembrane Helix	271	291	0.90
Cytoplasmic	292	324	0.97