YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36059
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.73
Transmembrane Helix	12	29	0.66
Non-Cytoplasmic	30	41	0.53
Transmembrane Helix	42	66	0.75
Cytoplasmic	67	86	0.60
Transmembrane Helix	87	108	0.49
Non-Cytoplasmic	109	115	0.59
Transmembrane Helix	116	135	0.78
Cytoplasmic	136	143	0.83
Transmembrane Helix	144	162	0.93
Non-Cytoplasmic	163	174	0.92
Transmembrane Helix	175	195	0.94
Cytoplasmic	196	207	0.84
Transmembrane Helix	208	228	0.91
Non-Cytoplasmic	229	241	0.88
Transmembrane Helix	242	264	0.91
Cytoplasmic	265	272	0.78
Transmembrane Helix	273	291	0.94
Non-Cytoplasmic	292	296	0.81
Transmembrane Helix	297	316	0.95
Cytoplasmic	317	344	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSENDSKF KYFGILLLTI QQASMPLMAR YSRAREDSNV FFTTVNVFMM EIIKVVVCSA  60
   61 IMIYTTKSVM KYINELKLAI FEHRSETLKV CIPALIYTLQ NNLYYIALSH LEATTFCISY 120
  121 QMKIFTTAIF MYFFLGKKLS TKQWWALVLL VLGVADIQYV YSPPPASEDV EQNPMYGFMA 180
  181 VLTMCFTSAF AGVYLEKVLK SSNASIWVQN IRLALIGLPI SFLSMWYYDW EKINEQGAFR 240
  241 GWDFVVVCLT VTNSVGGILI SVVIKYADNI LKAYAQSMAI IGAAVGSWIL FDFAPGFMFL 300
  301 LGTFMVIVSI IIYTAFPYQE PESKLSAYLK SQQNSSLLMI KPEK