YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srh-41
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISNQSCKP PTYLASTDFL ETGCHIGSVF MLTSSIYTLF LMAKKSPDTM KSSVPYMINL  60
   61 HVATMICDLT WAVIVLPMFF MPVIAAHASG ILTWVTRERN VILWPPFAVL GGMAACLITL 120
  121 FEHRHQAIVT RSWFVMKRKW TRRIIYPLFY AISINFGLVE LLTIPEDQAH AKQKAFKQHP 180
  181 CLPPIFFDDT SAVIQRDASL FNPHMYTCCF ILSVLVCFYC LHVLWHLLPR NNPSMSSGTR 240
  241 KMLRNFFISM CVQVTIPIVV LLLPNLYWNI SISFDYYSQE LNNISIILFT LHGTSSSIAV 300
  301 IFIYKPYRVY TKKLIFYKIL KLPEPRPVTI VASVSDRSGG RTAPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.88
Transmembrane Helix	22	41	0.89
Cytoplasmic	42	61	0.85
Transmembrane Helix	62	85	0.83
Non-Cytoplasmic	86	101	0.83
Transmembrane Helix	102	123	0.93
Cytoplasmic	124	143	0.92
Transmembrane Helix	144	164	0.90
Non-Cytoplasmic	165	203	0.98
Transmembrane Helix	204	225	0.93
Cytoplasmic	226	245	0.87
Transmembrane Helix	246	267	0.92
Non-Cytoplasmic	268	283	0.93
Transmembrane Helix	284	304	0.94
Cytoplasmic	305	345	0.96