YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srh-45
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATIPELE AYYYSHYLLK CTRTYSFFET EQFLEISSYA LFFLTTPINF LGIYCIIFKT  60
   61 PNEMLPIKWC MLYLHLLATF SSLCLTGVMM PYVFIPACAG FTVGLLPYLG VSTQLQGYIG 120
  121 IGCLGMLALS LPILFENRQR YLVNSFKITR PISRIIFYGF NVLFVPISLF GVFAIFPEQQ 180
  181 SARQAILRTL PCPTETYFTH SVFVLSLNHT PIITYLCALS IVAVVQILFF GGHSLTYLKT 240
  241 DARKLSVATR QLQKRFFLVI CIQLVLPCII LFIPVVYFIY SMLSGYYNQA LNNISFVTIT 300
  301 LYGATATITM IFLHKPYKKF VFSSFPSCQS RTNVVKPREW VRRNAVSVTT PVSF

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.92
Transmembrane Helix	36	58	0.88
Cytoplasmic	59	71	0.87
Transmembrane Helix	72	95	0.90
Non-Cytoplasmic	96	114	0.83
Transmembrane Helix	115	135	0.95
Cytoplasmic	136	154	0.96
Transmembrane Helix	155	176	0.95
Non-Cytoplasmic	177	211	0.97
Transmembrane Helix	212	235	0.94
Cytoplasmic	236	255	0.93
Transmembrane Helix	256	279	0.93
Non-Cytoplasmic	280	293	0.84
Transmembrane Helix	294	313	0.95
Cytoplasmic	314	354	0.97