YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36000
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLERVKASTS RISSATRSPC FQRWSPVLLI LLTTVFILFG ATCFYLFERD PHEMTVRKWY  60
   61 MNLAVERRQF ARTISSRIFN DTRNLLIIID REQTERVQQL LVESLKRYED KLTIVPPSRR 120
  121 EWSWISSFNF AYSLLLTIGG GFKVPATVGS QIFAVFYCLI GIPLFYSTLI LIVCRLVSPV 180
  181 LKWPSLTRSR RFLLILAAFG LFILWAILIG LCLYYQVIND FWLSILHAFT GSLTVQIPSP 240
  241 AQITTCGILF LNFAATISVS LLILILLVSF SVFFPKEMLI QEVDNGVEEK LERLTPPPKF 300
  301 QVIVDEAGES KLTSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.91
Transmembrane Helix	27	47	0.95
Cytoplasmic	48	123	0.95
Transmembrane Helix	124	146	0.83
Non-Cytoplasmic	147	152	0.81
Transmembrane Helix	153	174	0.94
Cytoplasmic	175	191	0.89
Transmembrane Helix	192	215	0.92
Non-Cytoplasmic	216	247	0.64
Transmembrane Helix	248	273	0.85
Cytoplasmic	274	315	0.64