YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sgcb-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDDEQITD ENVGNSIGDE VTGLRAKRLI ATLICLFVLF IISLITLALN IWIISTLRMN  60
   61 SNGVPFLRFY YSFNEKTKEM EKTVEMTGNQ LKFEKVVSNK IVGFPDKDIT ITAPRMLVTS 120
  121 RQNDSLLVMS EKLCKLERVN NFQVLSPKDG RTLFSARHPT VTIDKRIKKL AAERIITNKI 180
  181 RSAVDETLKI NGENVVLRGN EQVRIDARNV NFEGLKRMVF NISRDGILHM RGRVRLGDGA 240
  241 ASLPMSTSPS LSASLDGMRL CACAQFNHKL FIVPANKHCF TSNTFCS

Type	Start	End	Confidence
Cytoplasmic	1	31	0.94
Transmembrane Helix	32	54	0.93
Non-Cytoplasmic	55	287	0.97