YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.92
Transmembrane Helix	14	35	0.90
Non-Cytoplasmic	36	45	0.73
Transmembrane Helix	46	68	0.90
Cytoplasmic	69	93	0.88
Transmembrane Helix	94	116	0.86
Non-Cytoplasmic	117	135	0.94
Transmembrane Helix	136	158	0.90
Cytoplasmic	159	168	0.82
Transmembrane Helix	169	190	0.93
Non-Cytoplasmic	191	208	0.93
Transmembrane Helix	209	229	0.87
Cytoplasmic	230	240	0.88
Transmembrane Helix	241	263	0.88
Non-Cytoplasmic	264	298	0.92
Transmembrane Helix	299	325	0.81
Cytoplasmic	326	345	0.97
Transmembrane Helix	346	367	0.88
Non-Cytoplasmic	368	374	0.70
Transmembrane Helix	375	394	0.65
Cytoplasmic	395	403	0.66
Transmembrane Helix	404	426	0.90
Non-Cytoplasmic	427	431	0.62
Transmembrane Helix	432	453	0.89
Cytoplasmic	454	506	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESSSEIPQ KHTIGLITAI SYTVGDIVGS GIFISPTSIL NHAGSVGLSL CLWALCACIS  60
   61 LFGALSYVEL GTSIRKSGCD FAYLSHFGWR PLASSFMWVS TCLSYPAVLA IQAISFGEYI 120
  121 VTGLDSWITI DENWRFMTYR LVGFSMLWPL MLLNFFSLKK VAGAFQIVAT AIKLIVASII 180
  181 IITGLYHIIF KQQTQNFKNS FTGSDWNPGN LVLGVYSGLF AYNGWDVLNF GAEEIENPRR 240
  241 TLPIAAISGI AISATVFILM NVSYFSVLSV EDFKNSPAVA VVRTFFITFA ERTLGDFHYA 300
  301 IPFLISLLLI GSMNTTIFAC SRYMYSGAQQ SVMPTPLRGI HHRTRSPRLA VFAEILIAIC 360
  361 LSFIGNLDQL ISYMSFALWS QRTCTQVGFI YFKLRGTLKT QDSFQVPIFV PVVFLGICIA 420
  421 LLVIPITQNY HVAIYGVSMT IGGAIIYLIF IFPNTLPIFL HKINNSIVKF AQIIFNCVIE 480
  481 PYEDSTVEEF EEFEEINDYS KKFHRF