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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sqv-6
Protein type: Transmembrane
Type Confidence: 0.76
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNGTTKYR DYAIVISLFF LLNVYLLYNT AQHTQVGNSK HISSDSGEKT SNPLPSCEIT  60
   61 DDLAKSAISR AITPSCKAKL QLEACQLKNG TFTINFPENQ CPNHDSRLID QRIGCFLDKK 120
  121 EARVLTEFEY KLPKSNGKAT CRKHCYKAGF LYFGLEFGHE CFCGNDVSNA TAVDDVECRA 180
  181 YKCPGNENSE EFCGGFNAVE IFRTGFRSKV NHRKPTYLPP SSDSIKNPVK ILFLLQLNGR 240
  241 NERQVKRFLK SIYLPHHYYY IHVDARQNYM FSEMQKVADF LDNIHITERR FSTIWGGASL 300
  301 LQMFLQVIRD SMKIEKFKDW DYIINFSESD FPILPISDFE RLITVNNGKS FLASHGYNTG 360
  361 KFIQKQGFEY VFSECDNRMF RIGKREFPQN LRIDGGSDWV GIHRNLAEFS ISDEELPRKL 420
  421 RKTYESILLP LESFYHTLAF NSEFCDDLLM SNLRLTNWYR KQGCRCASLK PIVDWCGCSP 480
  481 LVFREETMKK FELQKAISKP TYFARKFDSM VDIDSIEAAE MQSISPEKLQ LNHPTYHFAF 540
  541 ANIFKTGIDE QKLHFESLAN FALKSTETRA KFRKVLRIDA LRAHHNALIE IVMKIETTDG 600
  601 ATFEFLIHRL SHVNLTENEE KLVEHGYLLR AVSFGTKFEW KEELCREYMG FVTDNDTLHT 660
  661 RLQWHPTEHV KKVGDKTSPE MIFKYRKGDE LIEQTVVKPY DSVFGGQFDS WNVGKKLSNL 720
  721 TTCSNFFVDI ISPSSPDDAP PLATLHFPVY TDQNAHCHVD YLRQFFKIAD FCTSGDACKE 780
  781 KIWSTSYPDP KSDIFVGYDE DTQTLI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle