YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35918
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQNPVYSP LSLGETNISQ QKHPSKKSTA LALVGTLVIF STVSLAIFGG FSNDDSDDNF  60
   61 GIAHVPYHKT LTTQNESIQL GNRFKNRYFE FKYEIVRGNY SHTNEDELAV KPFIVRNIER 120
  121 HSDGEPYDVY LHKIKPDEEG MIYWKFNLKA TDKVVKTLVI RMIGINQTLN EGGKAEACLE 180
  181 TFENCLEAPA NQDLTIDMPR ADTLFLGVKL YKNIKVFRYA EECMGCEELE SGFSVKAYWV 240
  241 STQDHLLNIS STFHDDSGRV FALSPKTGEN YAKFTYNFLN NSYSHNEPDG SPVRLFDFNG 300
  301 LERVEDYTEN TVFLRRKNPK EKGNIKWALD LNIDGLSVET VVIKIIGIDE IDNGGGTAIA 360
  361 CGHDLTSIVN PRCGNIPFNG KITFFNNAFH RLYLNITLDE DIQIFKTKLD DEGSLENVSV 420
  421 EVYWSDWRGT

Type	Start	End	Confidence
Cytoplasmic	1	28	0.80
Transmembrane Helix	29	50	0.76
Non-Cytoplasmic	51	430	0.99